Health Systems Implementation and Molecular Surveillance of Multiple First-Line Treatments for Uncomplicated Malaria in Western Kenya
Spatiotemporal Dynamics of Antimalarial Drug Resistance in Western Kenya During a Pilot Multiple First-line Treatment for Uncomplicated Malaria Study: Molecular Evidence of Resistance Saturation and Emerging Artemisinin Tolerance
2 other identifiers
observational
316
1 country
2
Brief Summary
This implementation study evaluated the health systems feasibility, economic costs, and stakeholder acceptability of deploying multiple first-line therapies (MFTs) that were of the artemisinin-based combination therapies (ACTs) type, for uncomplicated malaria in Western Kenya. The study included a nested observational molecular surveillance of antimalarial resistance markers in Plasmodium falciparum parasites. The implementation program involved adaptive cycling of four ACTs across 28 health facilities over 28 months (June 2020 - October 2022) with and extension to January 2024 in one geographic area (Mfangano Island). Health systems outcomes (feasibility, costs, acceptability) are reported in Cole et al., Malaria Journal 2024. Molecular surveillance outcomes (resistance marker prevalence and temporal trends) are reported in a companion manuscript currently under peer-review.
Trial Health
Trial Health Score
Automated assessment based on enrollment pace, timeline, and geographic reach
participants targeted
Target at P75+ for all trials
Started Jun 2020
Typical duration for all trials
2 active sites
Health score is calculated from publicly available data and should be used for screening purposes only.
Trial Relationships
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Study Timeline
Key milestones and dates
Study Start
First participant enrolled
June 1, 2020
CompletedPrimary Completion
Last participant's last visit for primary outcome
January 31, 2024
CompletedStudy Completion
Last participant's last visit for all outcomes
January 31, 2024
CompletedFirst Submitted
Initial submission to the registry
January 1, 2026
CompletedFirst Posted
Study publicly available on registry
January 23, 2026
CompletedJanuary 23, 2026
January 1, 2026
3.7 years
January 1, 2026
January 15, 2026
Conditions
Keywords
Outcome Measures
Primary Outcomes (4)
Health Systems Feasibility - Commodity Management Score
Assessment of drug supply chain functionality including quantification accuracy, stock management, and distribution logistics. Measured using structured health facility assessment checklist scoring five domains: (1) drug availability, (2) stock-out frequency, (3) quantification accuracy, (4) storage conditions, (5) distribution timeliness. Score range 0-100 where higher scores indicate better commodity management. Assessed at 28 health facilities.
June 2020 to January 2024
Health Systems Feasibility - Human Resources and Information Systems Score
Assessment of human resources adequacy and health information system functionality. Measured using structured facility assessment scoring: (1) healthcare worker availability, (2) training completion rates, (3) reporting tool adoption, (4) KHIS2 system functionality. Score range 0-100 where higher scores indicate better health systems capacity. Assessed at 28 health facilities.
June 2020 to January 2024
Stakeholder Acceptability - Composite Acceptability Score
Composite measure of MFT deployment acceptability among three stakeholder groups: policymakers, healthcare workers, and patients. Measured through: (1) key informant interviews (n=85) using semi-structured guides rated on 5-point Likert scale, (2) patient exit interviews assessing treatment satisfaction (5-point scale), (3) healthcare worker surveys assessing implementation feasibility (5-point scale). Composite score calculated as mean across all stakeholder groups. Range 1-5 where higher scores indicate greater acceptability.
June 2020 - January 2024
Economic Costs of Multiple First-Line Treatment Implementation
Total economic costs of MFT deployment calculated using activity-based costing approach with ingredient method. Includes start-up phase costs (training, IEC materials, reporting tool revision, KHIS2 updates, sensitization) and implementation phase costs (drug procurement, distribution, refresher training, quantification). Costs tracked prospectively from documents, receipts, and market prices. Reported as: (1) total economic vs financial costs in USD, (2) costs by category, (3) costs by funding source, (4) unit cost per facility covered in USD, (5) unit cost per patient treated in USD. Start-up costs annualized over 3-year useful life at 3% discount rate.
June 2020 to January 2024
Secondary Outcomes (4)
Prevalence of Antimalarial Resistance Markers
September 2020 to January 2024
Change in Antimalarial Resistance Marker Prevalence Over Time (Cochran-Armitage Trend Test)
Four time-points over 40 months: T1 (September 2020), T2 (August - October 2021), T3 (May - July 2022), T4 (November 2023 - January 2024)
Geographic Distribution of Antimalarial Resistance Markers
September 2020 - January 2024
Complexity of Infection in Plasmodium falciparum
September 2020 - January 2024
Study Arms (3)
Homa Bay Mainland: MFT Adaptive Cycling
Sequential deployment of multiple first-line artemisinin-based combination therapies using 8-month adaptive cycling with crowding-out approach. Treatment sequence: Baseline artemether-lumefantrine (AL) followed by dihydroartemisinin-piperaquine (DHA-PIP) for 8 months, then artesunate-amodiaquine (AS+AQ) for 8 months, then return to AL for 8 months. Approximately 40,000 patients treated across multiple health facilities. Note: This observational molecular surveillance study analyzed resistance markers from samples collected during MFT deployment by health authorities (described in Reference 34). Arms represent different drug deployment contexts in which molecular surveillance was conducted. No intervention by research team; observational analysis only.
Mfangano Island: MFT Extended Deployment
Extended deployment of a single alternative artemisinin-based combination therapy in a geographically isolated island setting. Treatment sequence: Baseline artemether-lumefantrine (AL) followed by pyronaridine-artesunate (AS+PYD) for extended 39-month period. Approximately 21,000 patients treated. This arm assessed health systems feasibility and molecular resistance dynamics with prolonged single MFT deployment in a relatively closed transmission environment since minimal data was available owing to AS+PYD recency of formulary inclusion. Note: This observational molecular surveillance study analyzed resistance markers from samples collected during MFT deployment by health authorities (described in Reference 34). Arms represent different drug deployment contexts in which molecular surveillance was conducted. No intervention by research team; observational analysis only.
Migori: Control
Continued artemether-lumefantrine (AL) as the only ACT throughout the entire study period as per Kenya national malaria treatment guidelines. Served as comparison group for health systems outcomes and molecular resistance surveillance. Approximately 32,835 patients treated. This arm represents standard of care without MFT intervention. Note: This observational molecular surveillance study analyzed resistance markers from samples collected during MFT deployment by health authorities (described in Reference 34). Arms represent different drug deployment contexts in which molecular surveillance was conducted. No intervention by research team; observational analysis only.
Interventions
Fixed-dose artemisinin-based combination therapy containing artemether and lumefantrine with dosage calculated by weight-bands according to manufacturers recommendations. Administered orally twice daily for 3 days (6 doses total). Used as baseline treatment across all study arms and continued throughout study period in comparison county. First-line treatment for uncomplicated malaria in Kenya. Supplied by Kenya Medical Supplies Authority through routine government procurement.
Fixed-dose artemisinin-based combination therapy containing dihydroartemisinin and piperaquine with dosage calculated by weight-bands according to manufacturers recommendations. Administered orally once daily for 3 days (3 doses total). Deployed in Homa Bay Mainland for 8 months during adaptive cycling. Donated by Tridem Pharma Ltd through Tridem Pharma Kenya. WHO-recommended ACT for uncomplicated falciparum malaria.
Fixed-dose artemisinin-based combination therapy. Administered orally once daily for 3 days (3 doses total) with dosage calculated by weighted-bands according to manufacturers recommendations. Deployed in Homa Bay Mainland for 8 months during adaptive cycling following DHA-PIP deployment. Donated by Sanofi through Surgi Pharm Ltd Kenya. WHO-recommended ACT for uncomplicated falciparum malaria.
Fixed-dose artemisinin-based combination therapy containing pyronaridine and artesunate (granule formulation) with dosage calculated by weighted-bands according to manufacturers recommendations. Administered orally once daily for 3 days (3 doses total). Deployed in Mfangano Island for extended 39-month period. Donated by Shin Poong Pharmaceuticals Co. Ltd, Republic of South Korea. WHO-recommended ACT for uncomplicated falciparum malaria, registered in Kenya but not yet included in national treatment guidelines at time of study hence the need for an extended observational follow-up period.
Eligibility Criteria
Patients diagnosed with uncomplicated Plasmodium falciparum malaria at participating government and faith-based health facilities in Homa Bay County and Migori County, Western Kenya, a malaria-endemic region with high transmission intensity.
You may qualify if:
- Age 5 years or older
- Clinical diagnosis of uncomplicated malaria
- Confirmed Plasmodium falciparum infection by rapid diagnostic test (RDT) or microscopy
- Presenting at participating health facility for malaria treatment
- Able and willing to provide informed consent (or parental/guardian consent for minors under 18 years)
- Resident of study catchment area
- For molecular surveillance substudy: willingness to provide dried blood spot sample
You may not qualify if:
- Pregnant women (due to contraindications for some study medications in first trimester and lack of safety data)
- Children under 5 years of age (due to lack of pediatric formulations for some study medications)
- Severe or complicated malaria requiring parenteral treatment or hospitalization
- Known hypersensitivity or contraindication to any of the study artemisinin-based combination therapies
- Unable to take oral medications
- Previous participation in current treatment episode (repeat visits)
- Concurrent participation in other interventional malaria treatment studies
Contact the study team to confirm eligibility.
Sponsors & Collaborators
- Medicines for Malaria Venturecollaborator
- KEMRI-Wellcome Trust Collaborative Research Programcollaborator
- Strathmore Universitylead
- Kenya Ministry of Healthcollaborator
- National Malaria Control Programme, Kenyacollaborator
- Homa Bay County Government, Kenyacollaborator
- Migori County Government, Kenyacollaborator
- Kenya Medical Supplies Authority (KEMSA), Kenyacollaborator
Study Sites (2)
Homa Bay County Health Facilities
Homa Bay, Homa Bay County, 40300, Kenya
Migori County Teaching and Referral Hospital
Migori, Migori County Kenya, 40400, Kenya
Related Publications (1)
Cole A, Chege T, Aman R, Githuka G, Muga R, Aspinall A, Kokwaro G. Health system challenges and facilitators associated with adaptive cycling deployment of multiple first-line treatment for uncomplicated malaria: a pilot study in a malaria-endemic region of Kenya. Malar J. 2025 Oct 10;24(1):328. doi: 10.1186/s12936-025-05580-7.
PMID: 41074071BACKGROUND
Related Links
Biospecimen
This observational molecular surveillance study was non-randomized. Multiple first-line therapies (MFTs) were deployed by health authorities as a health systems implementation program (Reference 34). The research team conducted observational molecular analysis only and did not assign treatments. Homa Bay Mainland received 8-month ACT cycling: AL baseline, then DHA-PIP, AS+AQ, and return to AL. Mfangano Island received extended 39-month AS+PYD deployment. Migori County continued AL monotherapy throughout (control). Dried blood spots (DBS) were collected from malaria-positive, de-identified laboratory samples at four time-points: T1 (Sep 2020, AL all sites), T2 (Aug-Oct 2021, DHA+PIP Homa Bay Mainland, AS+PYD 12 months Mfangano), T3 (May-Jul 2022, AS+AQ Homa Bay, AS+PYD Mfangano), T4 (Nov 2023-Jan 2024, Mfangano extended follow-up). Samples were analyzed by targeted amplicon deep sequencing for antimalarial resistance markers in dhfr, dhps, mdr1, and k13 genes.
MeSH Terms
Conditions
Interventions
Condition Hierarchy (Ancestors)
Intervention Hierarchy (Ancestors)
Study Officials
- STUDY DIRECTOR
Gilbert Kokwaro, PhD, FKNAS, FAAS
Institute of Healthcare Management, Strathmore University
Study Design
- Study Type
- observational
- Observational Model
- OTHER
- Time Perspective
- OTHER
- Sponsor Type
- OTHER
- Responsible Party
- PRINCIPAL INVESTIGATOR
- PI Title
- Research Scientist
Study Record Dates
First Submitted
January 1, 2026
First Posted
January 23, 2026
Study Start
June 1, 2020
Primary Completion
January 31, 2024
Study Completion
January 31, 2024
Last Updated
January 23, 2026
Record last verified: 2026-01
Data Sharing
- IPD Sharing
- Will not share