Spatial Transcriptomics in Kidney Transplantation
SPACE-KiT
1 other identifier
observational
500
1 country
1
Brief Summary
The study is an investigator-led, prospective, longitudinal, observational cohort study. The central hypothesis for this study is that spatial data will reveal new insights to immune cell function and local interactions within the kidney tissue to better predict important clinical outcomes. Investigators aspire to establish a prospective, longitudinal cohort to improve the diagnosis and management of kidney transplant rejection using precision pathology. By utilising new spatial technologies, the investigators aim to:
- Derive a spatially resolved transcriptomic signature of kidney transplant rejection subtypes
- Derive accurate transcriptomic signatures aligned with key cell types within the transplant kidney
- Develop refinements to histological kidney rejection diagnostic and scoring classification
- Correlate of spatial and refined biopsy scoring features to clinically important outcomes
Trial Health
Trial Health Score
Automated assessment based on enrollment pace, timeline, and geographic reach
participants targeted
Target at P75+ for all trials
Started Apr 2024
Longer than P75 for all trials
1 active site
Health score is calculated from publicly available data and should be used for screening purposes only.
Trial Relationships
Click on a node to explore related trials.
Study Timeline
Key milestones and dates
First Submitted
Initial submission to the registry
February 3, 2024
CompletedFirst Posted
Study publicly available on registry
March 1, 2024
CompletedStudy Start
First participant enrolled
April 3, 2024
CompletedPrimary Completion
Last participant's last visit for primary outcome
January 1, 2030
ExpectedStudy Completion
Last participant's last visit for all outcomes
January 1, 2035
April 24, 2024
April 1, 2024
5.8 years
February 3, 2024
April 22, 2024
Conditions
Outcome Measures
Primary Outcomes (3)
Kidney biopsy features
Based on the pathology subtype at original diagnosis
At biopsy or during study follow up following biopsy during study (expected 12-months)
Kidney biopsy transcriptomic signature
Based on bulk and/or spatial transcriptomic experiments
At biopsy - based on collected tissue sample
Kidney cell type composition
Cell type phenotyping of immune and kidney cell types
At biopsy - based on collected tissue sample
Secondary Outcomes (14)
All cause graft loss
At biopsy or during study follow up after biopsy (expected average over 60-months)
Death censored graft loss (DCGL)
At biopsy or during study follow up after biopsy (expected average over 60-months)
Treatment resistant rejection
At biopsy or during study follow up after biopsy (expected average 12-months)
Delayed graft function (DGF)
At biopsy or during study follow up after biopsy (within 7 days of transplantation)
Biopsy evidence of borderline rejection
At biopsy or during study follow up after biopsy (expected average 12-months)
- +9 more secondary outcomes
Study Arms (8)
No rejection, normal biopsy (controls)
Normal biopsy - no acute tubular injury (ATI), rejection or any other pathology
Acute kidney injury without evidence of rejection
Biopsy features of acute tubular injury but no evidence of rejection
Subclinical Rejection
Biopsy features of injury and inflammation but not meeting current diagnostic criteria for acute or chronic rejection
Acute rejection
Biopsy features of T-cell mediated, antibody-mediated, or mixed rejection
Isolated vascular rejection
Biopsy features of inflammation in the blood vessels only
Isolated glomerulitis
Biopsy features of inflammation in the glomeruli only
Chronic (active) rejection
Biopsy features of chronic rejection - T-cell, antibody or mixed types
BK virus associated nephropathy (BKVAN)
Biopsy features of SV40 positive staining in tubules to diagnose BKVAN
Interventions
Non interventional. Review of clinical, biopsy (histopathological and molecular) features associated with rejection and non-rejection pathology diagnosis
Eligibility Criteria
Kidney transplant (or kidney-pancreas transplant) recipients consenting to this study.
You may qualify if:
- All participants included in the study must be age ≥ 18 years old at time of enrolment and
- able to provide informed consent (interpreter permitted) for enrolment
- consenting to longitudinal follow up (can withdraw post enrolment)
- consenting to provide samples for biobanking, including blood, urine, faecal and/or kidney biopsy tissue (collected prospectively, separate to routine care)
You may not qualify if:
- Patients will be excluded from the study if they are
- unable (or unwilling) to provide consent, or
- have life-expectancy less than 6-months, or
- have received a haematopoietic stem cell transplant in the past 5 years.
Contact the study team to confirm eligibility.
Sponsors & Collaborators
Study Sites (1)
Westmead Hospital
Westmead, New South Wales, 2145, Australia
Biospecimen
Dedicated study samples will be collected at baseline and additional time-points based on the study group. Samples will be sent for processing and biobanking at the Westmead Institute for Medical Research Blood sampling: all patients will submit blood samples for extraction of genomic material (eg DNA, RNA), peripheral blood mononuclear cells (PBMC) and plasma/serum. Kidney biopsy sample: a dedicated sample of kidney biopsy may be collected for the study with the patient's permission. The core will be split so that half the sample is collected in specialised media for spatial transcriptomics and other molecular/proteinomic studies. Additional sampling: Mid-stream urine sample for pellet and supernatant and then stored at -80'c, Faecal sample in dedicated gut microbiome kits and then stored at -80'c. These samples will be biobanked and may be used later for proteinomic or microbiome studies.
Study Officials
- PRINCIPAL INVESTIGATOR
Jen Li, FRACP
Westmead Hospital
Study Design
- Study Type
- observational
- Observational Model
- COHORT
- Time Perspective
- PROSPECTIVE
- Sponsor Type
- OTHER
- Responsible Party
- PRINCIPAL INVESTIGATOR
- PI Title
- CPI, Nephrologist and Transplant Physician
Study Record Dates
First Submitted
February 3, 2024
First Posted
March 1, 2024
Study Start
April 3, 2024
Primary Completion (Estimated)
January 1, 2030
Study Completion (Estimated)
January 1, 2035
Last Updated
April 24, 2024
Record last verified: 2024-04
Data Sharing
- IPD Sharing
- Will not share