The Human Microbiome in Immune-Mediated Diseases
3 other identifiers
observational
75
1 country
2
Brief Summary
The immune system is influenced by the commensal microbes that live in the gut and on the skin. This study aims to characterize the microbiota of subjects with autoimmune disease in order to determine whether certain microbial species may cause or worsen immune-mediated diseases
Trial Health
Trial Health Score
Automated assessment based on enrollment pace, timeline, and geographic reach
participants targeted
Target at P50-P75 for all trials
Started Nov 2014
Longer than P75 for all trials
2 active sites
Health score is calculated from publicly available data and should be used for screening purposes only.
Trial Relationships
Click on a node to explore related trials.
Study Timeline
Key milestones and dates
Study Start
First participant enrolled
November 1, 2014
CompletedFirst Submitted
Initial submission to the registry
March 16, 2015
CompletedFirst Posted
Study publicly available on registry
March 20, 2015
CompletedPrimary Completion
Last participant's last visit for primary outcome
December 1, 2023
CompletedStudy Completion
Last participant's last visit for all outcomes
December 1, 2023
CompletedDecember 21, 2023
December 1, 2023
9.1 years
March 16, 2015
December 20, 2023
Conditions
Outcome Measures
Primary Outcomes (1)
Difference in Commensal bacteria
Difference in disease group vs. control commensal bacteria will be compared by looking at the relative abundances of the microbiota
8 weeks
Secondary Outcomes (1)
Immune Cross-reactivity with commensal bacteria
8 weeks
Study Arms (5)
Systemic Lupus Erythematosus
Blood, stool, and swab samples will be collected at baseline, week 4, and week 8 and compared with control samples
Subacute Cutaneous Lupus Erythematosus
Blood, stool, and swab samples will be collected at baseline, week 4, and week 8 and compared with control samples
Control
Blood, stool, and swab samples will be collected for comparison to each disease group
Cutaneous T-Cell Lymphoma
Blood and swab samples will be collected for comparison to each disease group
Autoimmune Disorders
Blood, stool, and swab samples will be collected for comparison to each disease group
Interventions
Sample collection of blood, stool, and buccal and skin swab samples will be collected at baseline, week 4, and week 8
Eligibility Criteria
Subjects with immune-mediated disorders including but not limited to: systemic lupus, cutaneous lupus, Sjogren's Syndrome, mixed connective tissue disease, dermatomyositis/polymyositis, celiac sprue with or without dermatitis herpetiformis, scleroderma, ANCA-associated vasculitis
You may qualify if:
- years of age and older
- Diagnosis of an immune-mediated disease by a healthcare provider, including but not limited to: systemic lupus erythematosus, subacute cutaneous lupus erythematosus
You may not qualify if:
- Ongoing chronic infection (viral, bacterial or fungal) including known HIV, Hepatitis B/C
- Acute infection receiving any antibiotics or any use of antibiotics within 90 days prior to screening
- For skin swab collection (see also appendix D):
- No use of topical antibiotics within 7-days prior to collection of swab, other than use in normal hand washing.
- No use of topical antimicrobial products (as outlined in appendix F) within 48 hours prior to collection of swab
- Subject must not have bathed within 8-hours of swab collection.
- For oral swab collection (see also appendix D):
- No use of antiseptic mouth washes (as outlined in appendix F) within 48 hours of swab collection
- Subjects must not have brushed teeth or flossed within 8-hours of swab collection
- Major gastrointestinal surgery less than 5 years prior to enrollment (with the exception of appendectomy)
- Any Gastrointestinal bleeding history
- Inflammatory Bowel Disease diagnosed by biopsy
- Bulimia or anorexia nervosa
- Probiotics (greater than estimated 109 cfu or organisms per day) within 90 days prior to enrollment (with the exception of fermented beverages, milks or yogurts).
- Morbid obesity (BMI ≥ 40)
- +4 more criteria
Contact the study team to confirm eligibility.
Sponsors & Collaborators
- Yale Universitylead
- National Institutes of Health (NIH)collaborator
- Arthritis Foundationcollaborator
- National Institute of Allergy and Infectious Diseases (NIAID)collaborator
Study Sites (2)
Yale New Haven Hospital
New Haven, Connecticut, 06519, United States
Hospital for Special Surgery
New York, New York, 10021, United States
Related Publications (6)
Ruff WE, Greiling TM, Kriegel MA. Host-microbiota interactions in immune-mediated diseases. Nat Rev Microbiol. 2020 Sep;18(9):521-538. doi: 10.1038/s41579-020-0367-2. Epub 2020 May 26.
PMID: 32457482BACKGROUNDZegarra-Ruiz DF, El Beidaq A, Iniguez AJ, Lubrano Di Ricco M, Manfredo Vieira S, Ruff WE, Mubiru D, Fine RL, Sterpka J, Greiling TM, Dehner C, Kriegel MA. A Diet-Sensitive Commensal Lactobacillus Strain Mediates TLR7-Dependent Systemic Autoimmunity. Cell Host Microbe. 2019 Jan 9;25(1):113-127.e6. doi: 10.1016/j.chom.2018.11.009. Epub 2018 Dec 20.
PMID: 30581114RESULTRuff WE, Dehner C, Kim WJ, Pagovich O, Aguiar CL, Yu AT, Roth AS, Vieira SM, Kriegel C, Adeniyi O, Mulla MJ, Abrahams VM, Kwok WW, Nussinov R, Erkan D, Goodman AL, Kriegel MA. Pathogenic Autoreactive T and B Cells Cross-React with Mimotopes Expressed by a Common Human Gut Commensal to Trigger Autoimmunity. Cell Host Microbe. 2019 Jul 10;26(1):100-113.e8. doi: 10.1016/j.chom.2019.05.003. Epub 2019 Jun 18.
PMID: 31227334RESULTGreiling TM, Dehner C, Chen X, Hughes K, Iniguez AJ, Boccitto M, Ruiz DZ, Renfroe SC, Vieira SM, Ruff WE, Sim S, Kriegel C, Glanternik J, Chen X, Girardi M, Degnan P, Costenbader KH, Goodman AL, Wolin SL, Kriegel MA. Commensal orthologs of the human autoantigen Ro60 as triggers of autoimmunity in lupus. Sci Transl Med. 2018 Mar 28;10(434):eaan2306. doi: 10.1126/scitranslmed.aan2306.
PMID: 29593104RESULTManfredo Vieira S, Hiltensperger M, Kumar V, Zegarra-Ruiz D, Dehner C, Khan N, Costa FRC, Tiniakou E, Greiling T, Ruff W, Barbieri A, Kriegel C, Mehta SS, Knight JR, Jain D, Goodman AL, Kriegel MA. Translocation of a gut pathobiont drives autoimmunity in mice and humans. Science. 2018 Mar 9;359(6380):1156-1161. doi: 10.1126/science.aar7201.
PMID: 29590047RESULTZhou H, Balint D, Shi Q, Vartanian T, Kriegel MA, Brito I. Lupus and inflammatory bowel disease share a common set of microbiome features distinct from other autoimmune disorders. Ann Rheum Dis. 2025 Jan;84(1):93-105. doi: 10.1136/ard-2024-225829. Epub 2025 Jan 2.
PMID: 39874239DERIVED
Biospecimen
whole blood, oral swab, skin swab, stool
MeSH Terms
Interventions
Intervention Hierarchy (Ancestors)
Study Officials
- PRINCIPAL INVESTIGATOR
Martin Kriegel, MD, PhD
Yale University
Study Design
- Study Type
- observational
- Observational Model
- CASE CONTROL
- Time Perspective
- PROSPECTIVE
- Sponsor Type
- OTHER
- Responsible Party
- SPONSOR
Study Record Dates
First Submitted
March 16, 2015
First Posted
March 20, 2015
Study Start
November 1, 2014
Primary Completion
December 1, 2023
Study Completion
December 1, 2023
Last Updated
December 21, 2023
Record last verified: 2023-12
Data Sharing
- IPD Sharing
- Will not share