Whole Genome Sequencing for Blood Group Genotyping and Definition as Exemplified on U- and St(a)+.
Blood Genome
Applicability of Whole Genome Sequencing for Human Blood Group Genotyping and Genetic Definition of New Alleles as Exemplified on References and the Two MNSs-variants: U- and Stones(a)+
1 other identifier
observational
8
1 country
1
Brief Summary
No health condition(s) are studied. Genetic background of blood groups is studied. U- and Stones(a)+ ("Caucasian type") are used as proof-of-principle samples. Disease associations of all blood group genes investigated are very rare, e.g. \< 1 among 1'000 Swiss individuals (see table 1), and are not to be expected in the course of this study. Genomic DNA of 2 U- samples were both provided as blinded reference material from New York and Vienna blood centres, respectively. Both donors are lost for follow up, and although there is no documented evidence for refusal of the respective donors to use their material in research projects, samples still lack informed consent.
Trial Health
Trial Health Score
Automated assessment based on enrollment pace, timeline, and geographic reach
participants targeted
Target at below P25 for all trials
Started Jul 2015
Typical duration for all trials
1 active site
Health score is calculated from publicly available data and should be used for screening purposes only.
Trial Relationships
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Study Timeline
Key milestones and dates
Study Start
First participant enrolled
July 1, 2015
CompletedFirst Submitted
Initial submission to the registry
August 10, 2015
CompletedFirst Posted
Study publicly available on registry
August 27, 2015
CompletedPrimary Completion
Last participant's last visit for primary outcome
June 1, 2016
CompletedStudy Completion
Last participant's last visit for all outcomes
June 1, 2018
CompletedAugust 27, 2015
August 1, 2015
11 months
August 10, 2015
August 24, 2015
Conditions
Outcome Measures
Primary Outcomes (1)
Whole Genome Sequencing for the definition of genetic background for blood group antigens U-, St(a)+
During a 2 year time-period, whole genome sequencing data generation and analysis will be used for the analysis and description of the genetic background for the blood group antigens U negativity, and for St(a).
2 year period
Study Arms (2)
people negative in bg MNSs antigen U
Blood group (bg) system MNSs. Individuals with phenotype "U-". Homo- and heterozygous individuals may be considered.
people positive in bg MNSs antigen St(a)
Blood group (bg) system MNSs. Individuals with phenotype "St(a)+". Homo- and heterozygous individuals may be considered.
Interventions
There will be no interventions needed other than blood sampling (20 mL blood) in the course of routine blood donation (450 mL blood) for 8 out of 10 individuals planned to be included as specimen, or reference samples in the study.
Eligibility Criteria
Genomic DNA of 2 U- samples were both provided as blinded reference material from New York and Vienna blood centres, respectively. Both donors are lost for follow up, and although there is no documented evidence for refusal of the respective donors to use their material in research projects, samples still lack informed consent. Additional reference samples (n max=4), and samples with suspected Stones(a)+ (n max=4) will be recruited from Zurich blood donors with informed consent, only
You may qualify if:
- Existing biomaterial (gDNA), or
- Existing health related data for blood group U- (n max=2) and eligible for (venous) blood sampling of 20 mL, or
- Existing blood group pheno- and genotyping data indicating St(a)+ and eligible for (venous) blood sampling of 20 mL (n max=2), or
- Adequate blood group profile serving as reference (n max =4 \& n max =4'000) and eligible for (venous) blood sampling of 20 mL.
You may not qualify if:
- Ineligible for venous blood sampling of approx. 20 mL.
Contact the study team to confirm eligibility.
Sponsors & Collaborators
Study Sites (1)
Blutpende Zürich, Dienstleistungszentrum
Schlieren, Canton of Zurich, 8952, Switzerland
Biospecimen
Two times 10 mL EDTA-anticoagulated whole blood and genomic DNA resulting from this amount.
MeSH Terms
Interventions
Intervention Hierarchy (Ancestors)
Study Officials
- PRINCIPAL INVESTIGATOR
Christoph Gassner, PhD
Blutspende Zürich, Dienstleistungszentrum
Central Study Contacts
Study Design
- Study Type
- observational
- Observational Model
- CASE CONTROL
- Target Duration
- 1 Day
- Sponsor Type
- OTHER
- Responsible Party
- PRINCIPAL INVESTIGATOR
- PI Title
- Priv. Doz. Mag. Dr. rer. nat. Christoph Gassner
Study Record Dates
First Submitted
August 10, 2015
First Posted
August 27, 2015
Study Start
July 1, 2015
Primary Completion
June 1, 2016
Study Completion
June 1, 2018
Last Updated
August 27, 2015
Record last verified: 2015-08