Genome Transplant Dynamics: Non-invasive Sequencing-based Diagnosis of Rejection
GTD
1 other identifier
observational
65
1 country
2
Brief Summary
The purpose of this study is to determine whether shotgun sequencing technology, which can be used to detect donor DNA in recipient plasma, can be used as a rapid, accurate, non-invasive method to detect Acute Cellular Rejection (ACR) after heart transplantation. Currently, all heart transplant recipients undergo invasive heart biopsies to diagnose ACR. Thus, there is an ongoing need to monitor patients for the development of acute and chronic rejection, with the primary goal of non-invasive early detection and treatment to prevent organ damage.
Trial Health
Trial Health Score
Automated assessment based on enrollment pace, timeline, and geographic reach
participants targeted
Target at P25-P50 for all trials
Started Mar 2010
Typical duration for all trials
2 active sites
Health score is calculated from publicly available data and should be used for screening purposes only.
Trial Relationships
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Study Timeline
Key milestones and dates
Study Start
First participant enrolled
March 1, 2010
CompletedFirst Submitted
Initial submission to the registry
May 28, 2013
CompletedPrimary Completion
Last participant's last visit for primary outcome
September 29, 2013
CompletedStudy Completion
Last participant's last visit for all outcomes
September 29, 2013
CompletedFirst Posted
Study publicly available on registry
November 15, 2013
CompletedOctober 4, 2019
October 1, 2019
3.6 years
May 28, 2013
October 2, 2019
Conditions
Keywords
Outcome Measures
Primary Outcomes (1)
Proportion of cell-free donor DNA to recipient DNA in the recipient's blood stream as a marker of rejection.
We will use high throughput next generation sequencing to monitor the proportion of cell-free donor DNA to recipient DNA in the recipient's blood stream as a marker of rejection.
The outcome measure is assessed for each patient up to 5 years post-transplant. Sampling timepoints include: Days 1, 2, 3, Weeks 1, 2, 4, 6, 8, 10, 12, Months 4, 5, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24 and quarterly through year 5
Study Arms (5)
Adult Heart Transplant Recipients
Patients \>18 yrs old that received a heart-only transplant and are followed at Stanford Hospital
Pediatric Heart Transplant Recipients
Patients \<18 yrs old that received a heart-only transplant and are followed at Lucile Packard Hospital
Adult Lung Transplant Recipients
Patients \>18 yrs old that received a lung-only transplant and are followed at Stanford Hospital
Pediatric Lung Transplant Recipients
Patients \<18 yrs old that received a lung-only transplant and are followed at Lucile Packard Hospital
Kaiser Adult Heart Transplant Recipients
Patients \>18 yrs old that received a heart-only transplant at Stanford Hospital but are followed at Kaiser Permanente in Santa Clara
Eligibility Criteria
Stanford and Lucille Packard adult and pediatric, lung or heart transplant recipients and Kaiser adult heart transplant recipients.
You may qualify if:
- All ages of heart or lung transplant recipients
- Recipients of re-do heart or re-do lung transplants
You may not qualify if:
- Patients wait-listed for multiple organ transplantation (e.g. heart-kidney, heart-liver, heart and lung.)
- Unable or unwilling to return to Stanford for biopsy and follow-up procedures
- Followed by Palo Alto VA Hospital after transplant surgery (VA patients are transplanted at Stanford, but all subsequent clinical care is performed at VA hospitals)
Contact the study team to confirm eligibility.
Sponsors & Collaborators
- Stanford Universitylead
- Kaiser Foundation Research Institutecollaborator
Study Sites (2)
Kaiser Permanente Northern California
Santa Clara, California, 95051, United States
Stanford University Hospital and Clinics
Stanford, California, 94305, United States
Related Publications (6)
Snyder TM, Khush KK, Valantine HA, Quake SR. Universal noninvasive detection of solid organ transplant rejection. Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6229-34. doi: 10.1073/pnas.1013924108. Epub 2011 Mar 28.
PMID: 21444804BACKGROUNDDe Vlaminck I, Khush KK, Strehl C, Kohli B, Luikart H, Neff NF, Okamoto J, Snyder TM, Cornfield DN, Nicolls MR, Weill D, Bernstein D, Valantine HA, Quake SR. Temporal response of the human virome to immunosuppression and antiviral therapy. Cell. 2013 Nov 21;155(5):1178-87. doi: 10.1016/j.cell.2013.10.034.
PMID: 24267896RESULTDe Vlaminck I, Valantine HA, Snyder TM, Strehl C, Cohen G, Luikart H, Neff NF, Okamoto J, Bernstein D, Weisshaar D, Quake SR, Khush KK. Circulating cell-free DNA enables noninvasive diagnosis of heart transplant rejection. Sci Transl Med. 2014 Jun 18;6(241):241ra77. doi: 10.1126/scitranslmed.3007803.
PMID: 24944192RESULTKeller M, Bush E, Diamond JM, Shah P, Matthew J, Brown AW, Sun J, Timofte I, Kong H, Tunc I, Luikart H, Iacono A, Nathan SD, Khush KK, Orens J, Jang M, Agbor-Enoh S. Use of donor-derived-cell-free DNA as a marker of early allograft injury in primary graft dysfunction (PGD) to predict the risk of chronic lung allograft dysfunction (CLAD). J Heart Lung Transplant. 2021 Jun;40(6):488-493. doi: 10.1016/j.healun.2021.02.008. Epub 2021 Feb 20.
PMID: 33814284DERIVEDAgbor-Enoh S, Jackson AM, Tunc I, Berry GJ, Cochrane A, Grimm D, Davis A, Shah P, Brown AW, Wang Y, Timofte I, Shah P, Gorham S, Wylie J, Goodwin N, Jang MK, Marishta A, Bhatti K, Fideli U, Yang Y, Luikart H, Cao Z, Pirooznia M, Zhu J, Marboe C, Iacono A, Nathan SD, Orens J, Valantine HA, Khush K. Late manifestation of alloantibody-associated injury and clinical pulmonary antibody-mediated rejection: Evidence from cell-free DNA analysis. J Heart Lung Transplant. 2018 Jul;37(7):925-932. doi: 10.1016/j.healun.2018.01.1305. Epub 2018 Jan 31.
PMID: 29500138DERIVEDVollmers C, De Vlaminck I, Valantine HA, Penland L, Luikart H, Strehl C, Cohen G, Khush KK, Quake SR. Monitoring pharmacologically induced immunosuppression by immune repertoire sequencing to detect acute allograft rejection in heart transplant patients: a proof-of-concept diagnostic accuracy study. PLoS Med. 2015 Oct 14;12(10):e1001890. doi: 10.1371/journal.pmed.1001890. eCollection 2015 Oct.
PMID: 26466143DERIVED
Biospecimen
A single whole blood specimen from both the donor and recipient of the organ prior to transplant. Additionally, blood samples are taken post-transplant at specified timepoints and spun down into a plasma, buffycoat layer. The plasma and buffycoat are retained while the rest is discarded.
MeSH Terms
Conditions
Condition Hierarchy (Ancestors)
Study Officials
- PRINCIPAL INVESTIGATOR
Kiran Khush, MD MAS FACC
Stanford University Hospital and Clinics
Study Design
- Study Type
- observational
- Observational Model
- COHORT
- Time Perspective
- PROSPECTIVE
- Sponsor Type
- OTHER
- Responsible Party
- PRINCIPAL INVESTIGATOR
- PI Title
- Kiran Khush, MD, MAS, FACC
Study Record Dates
First Submitted
May 28, 2013
First Posted
November 15, 2013
Study Start
March 1, 2010
Primary Completion
September 29, 2013
Study Completion
September 29, 2013
Last Updated
October 4, 2019
Record last verified: 2019-10